Scaffold B570J29032_109889324

Overview

Basic Information

• Taxon OID: 3300002408
• Scaffold ID: B570J29032_109889324
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2031
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010746	Metagenome / Metatranscriptome	299	Y
F016115	Metagenome / Metatranscriptome	249	Y
F020860	Metagenome / Metatranscriptome	221	N
F035200	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29032_1098893241	F020860	AGTAG	MEITKAKKLKEGGYALYGIDPKTKTETQVGYIGEGLTLEAWLPKGVKIENS*
B570J29032_1098893242	F016115	AGGA	MVGRDGDVAIYKKQLDDPESQNYHYEVVAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWGFTCVSREDADKRFVQLQEKLSAYVATATLPNGEKRGRGRPRKIDLTKTELVVS*
B570J29032_1098893243	F010746	N/A	MTYKCAVSGEAIPPERVEALQVLGVPETLWTKKEYSQTRKLKAVYAGDDGSNDIVICDAVDGGNLFENSIVAEVENE*
B570J29032_1098893244	F035200	GGAGG	MNNKFIVLRDGVRVSEDMHPSETSAEVEANYWREIIKRWPDGTKVVVKKIGG*
B570J29032_1098893247	F007359	N/A	MKLTKQNLGAHWVIGIKGNKDEIEQFHNRVYNWGGTNGELQWMSNDFAYFWITLEKLERVMFKYVMNGITDKLGKKFRGAKGGLKAVAMNRIKNTIDNIPTENFVRTAQVEDIYSLGTISAEKLDTDS*