Scaffold JGI24499J29688_1009515

Overview

Basic Information

• Taxon OID: 3300002406
• Scaffold ID: JGI24499J29688_1009515
• Source Dataset Name: Biogas fermentation microbial communities from Germany - Plant 1 RNA2 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2058
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location

• Location Name: Bielefeld, North Rhine-Westphalia, Germany
• Coordinates
  • Lat. (^o): 52.0385
  • Long. (^o): 8.4956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F004383	Metagenome / Metatranscriptome	440	Y
F031138	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24499J29688_10095152	F031138	GAG	MTKRXTYVGPCATACKPGAGTDAQNGTFDRILVAAAEHAAREAGLPGRADRMIACRSCGAPTASSDGICRDCADAMREERAEALGERCRIHRVRYVEDLPVSALEEMQAEWGRC*
JGI24499J29688_10095154	F004383	GGTGG	MPSSDNLLEHAFMARIRADEYREALAALQREFDERPDVIEIKRLIDRCEEERRQAIAKAQEQGVTKQGSFRLKVRTRKQRTVIPDKFFARFGAETFVRCSTVAIGKAEAEVGKAALDECCEVEVKDLGATVEYVRPEARE*
JGI24499J29688_10095156	F003987	GGAGG	MIPALPCGTYSDGDIPAGAFFVAAFEDGDQPRHVGEYRIETVIRALRALQACGYDDVEIGSVERSGETHLLLIGLDGEARFGDRQMGCIAVLPVGVD*