Scaffold B570J29611_1000173

Overview

Basic Information

• Taxon OID: 3300002401
• Scaffold ID: B570J29611_1000173
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26JUN2009 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6403
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003748	Metagenome / Metatranscriptome	470	Y
F016253	Metagenome / Metatranscriptome	248	Y
F048938	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29611_10001737	F003748	N/A	MFQVNRRDAGGRYIDAEGDYTVTVAKVEETLDAKGREVCKVTFKTEDGASITDRFINQENVWFRVNQLVAATKHSVPDGTEYDFLGVKGSYAAFLKSMTGLELLITARFEEYMVNGETKKTLRIKNMREVPIAEVDGDDLDPKPF*
B570J29611_10001738	F016253	N/A	MSDRIKSLIDGGTGVYSISKKEAGEIHKAAKKIKNYEVSYWTMNRKNKESK*
B570J29611_10001739	F048938	AGGA	MNIEETKECIRVMQAFVDGKDLEVLGPVGKWEPLYFPRWGWDDTKYRIKPTYVLRPWTADEVPLGMQARNCEYPKTRWLIDRTSSEENRKDWCEKYEHSIDGGKTWLPCGVMEESK*