Scaffold B570J29612_1001660

Overview

Basic Information

• Taxon OID: 3300002397
• Scaffold ID: B570J29612_1001660
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2223
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008079	Metagenome / Metatranscriptome	339	Y
F018483	Metagenome / Metatranscriptome	235	N
F035568	Metagenome / Metatranscriptome	172	N

Sequences

Protein ID	Family	RBS	Sequence
B570J29612_10016602	F018483	AGGA	MMCQAVEAYIYSKKGVAIKINRIAIISDARQMEMXAYAYAYANGDR*
B570J29612_10016604	F008079	N/A	MKIKDEYIGAKISHKGNRITLDASRYDYFVSIGLGYMFEEPTVSEPKVVKYKAVKGPIPTPEPVVEDTEDGTEAE*
B570J29612_10016605	F035568	N/A	DPGKVKAYLLNTIKMQILWSTSLTNRQERVTATDSTMPIVMDDDTDLWDKIKEDMQYQDNMAVIETYRGRITDRIKLIVFQTYFDKGYSTARAMAEYFKIPVTSAHYWIQEIKTDLKQLRDEN*