Scaffold B570J29612_1000278

Overview

Basic Information

• Taxon OID: 3300002397
• Scaffold ID: B570J29612_1000278
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4744
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038078	Metagenome / Metatranscriptome	166	N
F045533	Metagenome / Metatranscriptome	152	N
F045559	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
B570J29612_10002782	F045559	N/A	MDLTPENIKQTTQASELRKDVAKENYKYVKLTGISNVINSLHSTDFSNEPLMHDRMNRVHILKWKIKNVDPNWHLTDQVTLMEHQILDLLDGIDHMKPWNEIGNKLKYLALFSIIENLKKIHPRWGIHLESLETPEKNHWCKCYKCHEARMQKYKIVIQDNPETERLDESS*
B570J29612_10002783	F045533	N/A	MAEKPEDNILSSDQRPANEKEELVYRLLCLINLAFSQVGKRNEDYLVLQQIHETKLKITRIDPSWSFYDSNDYLINKILRYINAINSNKEWNHEDNIKLFTEVRRDMIVLKEHNAYWFIDKNSIESHNPFLCHGCRKLKEEK*
B570J29612_10002784	F038078	N/A	MAAKGDKCTVRMKKSKRESIERFFSLINFIFFMSEEEDITLLRYLHEAKARVLANSEYWSLVDYIGMTIGRIFRCIDTINVEEKWDSKNNKEWFHEMIKSMNTLKDLHPQWHLTKQDVDRYSTTCPCSQCSTEEDREDTISSSISKLNI*