Scaffold B570J29605_1011032

Overview

Basic Information

• Taxon OID: 3300002393
• Scaffold ID: B570J29605_1011032
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 533
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003195	Metagenome	501	N
F042795	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29605_10110321	F042795	GAGG	MTIEADIRTPLQTTLSTIAANVYNGIPETMTSPSIVLIPGTPYLESVLINGATTKVKINLTVTGVVAYMNN
B570J29605_10110322	F003195	N/A	VTDDRIEPFTFTAATAAADRDYPLPFIPSALATLSGSSAAQLYASTPPIENAILVVSVEIFQSITAPGNQIMSDTFQPQPFILGRSLTNRVVGLLGPFLDVEAMCQ*