Scaffold B570J29605_1000092

Overview

Basic Information

• Taxon OID: 3300002393
• Scaffold ID: B570J29605_1000092
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13199
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (25.93%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F042157	Metagenome	158	N
F049410	Metagenome	146	N
F068425	Metagenome	124	Y
F071219	Metagenome	122	N
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
B570J29605_100009210	F049410	GGA	MTRGTRYTNGKEVITFVKIDFIVIGGRKIDHVYFRRKDKVDLILPLLEWNLKGKFEWEIIN*
B570J29605_100009212	F041191	GGA	MKLLYKPKRLTCDIIIPNLEKSDGVQKVIGFSRGWHHWNSIRLGIRKEENYCVLYFYAYIKGQRIIQRIGRYQIGEVVKCALSWGYYIECKANNGYAFRVAPKCSFPIGYLLYPYAEKDGVEGIEVPLNIEIMNLKID*
B570J29605_100009214	F102493	N/A	LYLIIFILYLPKFKTNNIMETTLTLHWEYEETDRENNISGGWVLTDITNGNTPVYLSPKLEQLLNEELDPENF*
B570J29605_10000924	F071219	N/A	MIHPHHPDNSILVIITSVIIQAGVWTSDWFGNINLTGIYDTIYDFAKLAALVVSMWASYRVAKKNKND*
B570J29605_10000926	F068425	N/A	MSIHQKRLLIGLTNGINNNNMKPQHQLITFAALCLLLIIGLNHCAKDKPKTIPFDYKSEAEMMKKQFGIEQAILLNQLEAANRRLQTANNAKDSIRKRELSLTNTNIALMKKLRDRLPKECDTVFVLCDEIINVKDSSYAALFNAFQLCADGSNIKDSLITNYKAENVTDSTLLVISKQETKQQRRGKVAAWCVGGAMFILWLVVGLK*
B570J29605_10000928	F042157	N/A	MNLKQKYRSPDNKQLKKIADYLIYVLLPFIQTSLALAETQGLISLKQAFWGGLAATFLLINTKFLTKFTTEKPTRNGNIDGDGC*