NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29615_100404

Scaffold B570J29615_100404


Overview

Basic Information
Taxon OID3300002385 Open in IMG/M
Scaffold IDB570J29615_100404 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2639
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002353Metagenome / Metatranscriptome567Y
F015168Metagenome / Metatranscriptome257N

Sequences

Protein IDFamilyRBSSequence
B570J29615_1004041F015168AGGAMSRQLIVGNQGRTHQVGAYQGSFKGRERIAYQDLPSIHEIEQILEQLTANITLRTEDIPKRPITLPPIYTELSEIDVYTEMARLDLQYDDLRTDKPRTASLARLCKALCIGRYIALGNQPPLQYKSWALVCPMNFENPDMPHGEQSHLAVDNSTKFIIKSMKHRDTIKDASGKTGHMIIPELYHYNNCMCASDCIANNQESLHFLRICAPRSLRQQYAEADHLPDARNAVSIGKKYGNSHTVYYSSVSVSGTVTPQMICRQPITELTRKSPIFRTPQYSHVDMSNDLHLIRAIGACLSRQEIHQYTKNFTESCKMDETTEETGNLYRFPKMNRNRQNTDILSLNPSYNSLDQALANEPLAEPFMGPQACPYCPTILQVAEPKDYLLHLFDHHAILTEAYFTCPGCIAICIFNKETYPAHYTEIHSQASALIMMFTETATHIRTQQALQLSLFIEVTLRLESCYPAEEQNKEPHYVSYLGGYSSNKKALFREVQNEQIKRNPLDLMHQMEEILSADFTTTEEIFNIQRPSSPIFLKQIKN
B570J29615_1004043F002353N/AVVFPVLVADVDVREDSIFIRLRKEEVVCEDQDTSKRVSSIDVLEPVVEKVPEIGSEVTVPLETIPEDLIFESGEAFSLEGVDNIPMEELFCGSHGDGSL
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