Scaffold B570J29648_103716

Overview

Basic Information

• Taxon OID: 3300002382
• Scaffold ID: B570J29648_103716
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2009 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 817
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002060	Metagenome / Metatranscriptome	597	Y
F011938	Metagenome / Metatranscriptome	285	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29648_1037161	F002060	N/A	MNMDYTSIVIAISAAVLSGMGTAIIAGLKENKREXVRKHEREQDQLKLEVKDLKIELYKIERELTEWKDKYYNAIQELIGVKAELEETLLKLTFIDHQIEDLQGLDREF*
B570J29648_1037163	F011938	N/A	SLVKEYYDVTHIVYIHGEDSHGTVEKLGAYASVVKYTKDGVEYSELMENDEFTIVDEIVFKHIEESN*