Scaffold JGI24502J29692_10057094

Overview

Basic Information

• Taxon OID: 3300002378
• Scaffold ID: JGI24502J29692_10057094
• Source Dataset Name: Biogas fermentation microbial communities from Germany - Plant 3 RNA1 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1413
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location

• Location Name: Bielefeld, North Rhine-Westphalia, Germany
• Coordinates
  • Lat. (^o): 52.0385
  • Long. (^o): 8.4956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029085	Metagenome / Metatranscriptome	189	N
F047639	Metagenome / Metatranscriptome	149	Y
F075995	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24502J29692_100570941	F047639	N/A	FNSDKSTTVTYHLSDKFKPSFLINPNHIFNYKGYRTIVITDKSAETVNPLDFESKFNHEDFQTAIESKLIKDTFSTLKSNTIDKTTVMLLLNIILHIVVIYLLLKWQGMI*
JGI24502J29692_100570942	F029085	GGA	MKNIKEEKLKIDELLEENISEQLESGSPDLVSLIAISELTNLEKLKVITRLKDEQVPLLSKLYMYAETFNIPFIRNLADNILQLQISIRGLGRKELVNIVRESTPQETRRGLFERKDVFR
JGI24502J29692_100570944	F075995	AGGGGG	MKNKLFGVYKPIDKANVFITKNFKRVFYGFRTLYAKDLTGRVYVRYKNKYYQAHYDGRHTYNVRIR*