Scaffold JGI24502J29692_10030866

Overview

Basic Information

• Taxon OID: 3300002378
• Scaffold ID: JGI24502J29692_10030866
• Source Dataset Name: Biogas fermentation microbial communities from Germany - Plant 3 RNA1 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1974
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location

• Location Name: Bielefeld, North Rhine-Westphalia, Germany
• Coordinates
  • Lat. (^o): 52.0385
  • Long. (^o): 8.4956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029085	Metagenome / Metatranscriptome	189	N
F047639	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24502J29692_100308663	F047639	AGGAG	MRFLNKHKYLRVIKFNSDKSSTVSYHLSSKYTPNFLINPDHIFLHNGYRTVVITDKSAETINPLDFESKFNSSDFQTAIESKLIRDTFSTLKHNLFDKVTILLILNLVITLGVLYFLLKSQGVI*
JGI24502J29692_100308664	F029085	AGG	MKKVKEDKLKIDELLEENISEQLENGSSDLVSLIAISELTNLDKLKVITRLKEEQVPILTKLYMYAETFNVPFVKNMADNILQLQISIRGLGRKELVNIVRESTPTEVKRGLFGRKDVFR