Basic Information | |
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Taxon OID | 3300002377 Open in IMG/M |
Scaffold ID | JGI24500J29687_10043249 Open in IMG/M |
Source Dataset Name | Biogas fermentation microbial communities from Germany - Plant 2 RNA1 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2877 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany |
Source Dataset Sampling Location | ||||||||
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Location Name | Bielefeld, North Rhine-Westphalia, Germany | |||||||
Coordinates | Lat. (o) | 52.0385 | Long. (o) | 8.4956 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F029085 | Metagenome / Metatranscriptome | 189 | N |
F047639 | Metagenome / Metatranscriptome | 149 | Y |
F075995 | Metagenome / Metatranscriptome | 118 | Y |
Protein ID | Family | RBS | Sequence |
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JGI24500J29687_100432494 | F047639 | AGGAG | MRLFNKHKYLRVIKFNSDKSTTVTYHLSDKFKPSFLINPDHIFNYKGYRTIVITDKSAETINPLDFNSKFNHADFQTAIESKLIKDTFTTLKPNKLDKTTFILLLILILNIAVIYLLLKWQRMI* |
JGI24500J29687_100432495 | F029085 | GAGG | MKNVKDEKLKIDDLLEENISEQLESGTSDLVSLIAISELTNLNKLKVITRLKDEQIPLLSKLYMYAETFNIPFIRNLADNILQLQISIRGLGRKELVNIVRESTPSETKRGLFERKDVFR |
JGI24500J29687_100432497 | F075995 | AGGGGG | MKNKLFGVYKPIGKANVFITKNFKRVFYGFRTLYAKDLTGRVYVRYKNKYYQA |
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