NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24500J29687_10026893

Scaffold JGI24500J29687_10026893


Overview

Basic Information
Taxon OID3300002377 Open in IMG/M
Scaffold IDJGI24500J29687_10026893 Open in IMG/M
Source Dataset NameBiogas fermentation microbial communities from Germany - Plant 2 RNA1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3222
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location
Location NameBielefeld, North Rhine-Westphalia, Germany
CoordinatesLat. (o)52.0385Long. (o)8.4956Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029085Metagenome / Metatranscriptome189N
F047639Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
JGI24500J29687_100268934F047639AGGAGGMRFLNKHKYLRVIKFNSDKSSTITYHLSSKFKPNFLINPDHIFLYNGYRTVVITDKSAETINPLDFNSKFNSNDFKTAIESKLIKDTFSTLKHNLFDKVTILLILNLVITLGVLYFLLKSQGVI*
JGI24500J29687_100268935F029085AGGLKDIKNEKLNINELLEENINEQLENGSSDLVSLIAITELTNLDKLKVITRIKEEQVPVLTKLYMYAETFNIPFVKNMADNILQLQVSIRGLGRKELVNIVRESTPTEVKRGLFGTKEVFR

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