Scaffold B570J29620_1000210

Overview

Basic Information

• Taxon OID: 3300002374
• Scaffold ID: B570J29620_1000210
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 04SEP2011 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4741
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014956	Metagenome / Metatranscriptome	258	Y
F021732	Metagenome / Metatranscriptome	217	Y
F031483	Metagenome	182	N

Sequences

Protein ID	Family	RBS	Sequence
B570J29620_10002104	F021732	N/A	MSITKYTVKCCLDKKLGHFVHVIFSHGHGLHGDNLPRHTDEGMEIHGWTFEPEDIDLKLYPVINDRNLMPLVDENEMDWVIIKN*
B570J29620_10002106	F014956	GAG	MNIHDFVINVTTTVCPSHIVEPLHLKKWWRQRGVGELEKYFVSGNAIHYNEEIDWKKISDHKKSLWYDSQNFQINMGHEYSKRTS*
B570J29620_10002107	F031483	N/A	MNILKGRVKYTAGKVFEGQYGLSINAAITLENGTDIRVYGKPDDEKLKALQKDEVVTIIHDGKSYKIAFDMVTANELPEKVQTPTEGNNVQQAANVPPKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKFF*