NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29640_100681

Scaffold B570J29640_100681


Overview

Basic Information
Taxon OID3300002369 Open in IMG/M
Scaffold IDB570J29640_100681 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 14NOV2009 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1996
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078215Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
B570J29640_1006815F078215GAGGMAFDPSFFEQQRRNLFNQYGQQAALNAYQRYLAETRGQRPITQLEEAAFATTPGGGLGQVPKLTSSYARRGLQGQNVRSGIYDQALQSYAKNRARDIGYAREDLAGTSRGYDLADTQGLANYQEGLKDLESNKARQIA

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