Scaffold B570J29601

Basic Information
Taxon OID	3300002365 Open in IMG/M
Scaffold ID	B570J29601_100143 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 14SEP2010 deep hole epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002365 Open in IMG/M

Scaffold ID

B570J29601_100143 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 14SEP2010 deep hole epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3256
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3256

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002353	Metagenome / Metatranscriptome	567	Y
F008069	Metagenome / Metatranscriptome	339	N
F015168	Metagenome / Metatranscriptome	257	N

Sequences

Protein ID	Family	RBS	Sequence
B570J29601_1001431	F015168	AGGA	MSRQLIVGNQGRTHQVGAYQGSFRGRERIAYQDLPSIHEIEQILEQLTANITLRTEDIPMRPITLPPIYTELSEIDVYTEMARLDLQYDDLRTDKPRTASLARLCKALCIGRYIALGNQPPLQYKSWALVCPMNFENPDMPHGEQSHLAVDNSTKFIIKSMKHRDTIKDASGKTGHMIIPELYHYNNCMCASDCIANNQESLHFLRICAPRSLRQQYAEADHLPDARNAVSIGKKYGNSHTVYYSSVSVSGTVTPQMICRQPITELTRKSPIFRTPQYSHVDMSNDLHLIRAIGACLSRQEIHQYTKNFTESCKMDETTEETGNLYRFPKMNRNRQNTDILSLNPSYNSLDQALANEPLVEPFMGPQACPYCPTILQITEPKDYLLHLFDHHAILTEAYFTCPGCIAICIFNKETYPAHYTEVHSQASALIIMFTETATHIRTQQA
B570J29601_1001433	F002353	N/A	VVFPVLVADVDVREDSIFIRLRKEEVVCEDQDTSKRVSSXXVLEPVVEKVPEIGSEVTVPLETIPEDLIFESGEAFSLEGVDNIPMEELFCGSHGDGSLAGSSDITGISVDTVXDLNLAS
B570J29601_1001434	F008069	N/A	KINISVNTLPIKYSKAIKAQWKTLPVPHQPPMITKKPSTKRIATIKTPNTPYYVEEQLLDQDSFLFSTSIELSVNKIRPEKNYKTRYKSSFQSNRKGILYIELPKEKNPNKKVRFSRLEIKFY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J29601_100143

Overview

Ecosystem & Geography

Associated Families

Sequences