NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29624_107940

Scaffold B570J29624_107940


Overview

Basic Information
Taxon OID3300002363 Open in IMG/M
Scaffold IDB570J29624_107940 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)631
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056617Metagenome / Metatranscriptome137N
F101137Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
B570J29624_1079401F056617N/AMIHRAKYERLLKNSKGQYRYQFNWVSGGFNDIWAKNLKEFKVELKRQFGNSNLDVDYKTLHKATESGARSWDRA
B570J29624_1079403F101137N/ASCNVNCTYDEINEGCDVERISDFDTMSSRDGIYSVRDLYDFVIN*

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