Scaffold B570J29624_100774

Overview

Basic Information

• Taxon OID: 3300002363
• Scaffold ID: B570J29624_100774
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2529
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003626	Metagenome / Metatranscriptome	476	Y
F028170	Metagenome / Metatranscriptome	192	Y
F073547	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29624_1007741	F073547	N/A	MGNITTKINVNVKPGKKLTESELDELVVDELEDLPHDLRIALRESISSEYGGGNSDILTGQSYKAIDYDDFPIGMYLVNKTGRSASAFFRISDEFQVKQEDALALVEKLGFVEVFNKSLYMNSGHFENKIYEKVFDDGIVLLMVDSIAKKWGASVSKSYREDRGINISLCSNASPKDFNEITSQFTPLAKRRREKENNIALVIQTNRGYDTTSFELPKQKLDIELGYGKSFKPIHEKIIHKLNERKSKGLVLLHGTPGTGKTHYLKYLASKIKNKRVLFIPPFLADF
B570J29624_1007742	F028170	N/A	MALKKLMKGLEASLKVEREIHPKTMLGMWFHNFKMRNIEYRINDIKKELNNRKTKNNG*
B570J29624_1007745	F003626	N/A	MKEWIAKYQKAIVGTGAVAVLILCYFQQKELSKLRSEQIKVYNVPHNVDSLITLKDSLYDELFISKVQNGRYELSLENLYEVNPKAGKQFTEFMEHETE*