NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29630_1005611

Scaffold B570J29630_1005611


Overview

Basic Information
Taxon OID3300002360 Open in IMG/M
Scaffold IDB570J29630_1005611 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 02JUN2010 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)859
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032550Metagenome / Metatranscriptome179N
F054611Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
B570J29630_10056111F032550N/AMIVEENLEGWNNIPVKSKEVIYPQSKDDKAPKNYFLGIFCGSRGSGKSYLFTKLLKTLEEKKAYLDDKLVPQRIILISSTANSDSNLIFKTLKNLDWDNDVIDDYNDDLLIMKMDELKTDLNHSKDYKLYKEAWKNFIHCKDIDELDDDELKLLYSYDFIPFKEFPKPKYPDGFLIHWIIDDMLGTNIFKNGRSTFTNLCIRN
B570J29630_10056112F054611N/AMVDIDQEKLQNLMELVIKEHPDLDPYVVWIISANFLLNEQGIYGDEKLAEQIREQRNKESGYNIRIV

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