Scaffold B570J29598_102129

Overview

Basic Information

• Taxon OID: 3300002356
• Scaffold ID: B570J29598_102129
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 30AUG2010 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 927
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002207	Metagenome / Metatranscriptome	583	Y
F018162	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29598_1021291	F002207	AGGA	MPNWVYNTLTIQGPKEEIDYIKDRLNRPFTLAQETYGMGDISSMGFPTKIKEVTYSNPVFAFFNIHSYKDDGITDEEYACQPTRSGADIKDPNWFAQEIAHAKTQKDWYSWNNTNWGTKWDVA
B570J29598_1021292	F018162	N/A	RIAISNMIGDAWASETGWGLQVNEISDNEHKIPVVNWLECTFSLHEEDSFHNESNKVRGMKNEAMFTMDLRAFVEKYTDAKILV*