Scaffold B570J29582_1000092

Overview

Basic Information

• Taxon OID: 3300002351
• Scaffold ID: B570J29582_1000092
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05MAY2012 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10812
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031491	Metagenome / Metatranscriptome	182	Y
F041189	Metagenome / Metatranscriptome	160	Y
F066792	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29582_100009214	F066792	N/A	MIKENPSIAAFKVWXFPTLVSLXSLLIWNDVNEIKSDVKXLMAQSNIDKTRIDNLERQMFKSAGFPATPIKHLNDYQSIVAILPDNKYKTIKYDF*
B570J29582_10000925	F041189	N/A	MFSTTGQEVKQGGGTLKSLQPGVAYAHIHSSQVRTSNKGDKKVLELTLVGEAADGFEGWAIDKDNPEGAKYEGPSSRVSATIWTDQFNSDDINKNDILNKIVVIATELGVRTEIDAISAKSSVTSIEQWVAEATNVLKGHNIYWFLKGTEEEYNGKTITKLSLPKYKFVSKEESKLDKFDKNNQYHFXGLVNKPVXSFEPTTDDFQM*
B570J29582_10000927	F031491	N/A	MTQEEIKELKKXKLENIRDYXQKLIDNLEIPRSDFNMXMAFYDKQGRNVVGIFASEFKKEKGFYFELITRDLEPLDAERTVYKIPSNSAFEEEFELNEKGSYLVPLEELRIVNTTSVAISGASAISDKPSFKPPIAAYKAPGAMEDAPYTEMTIRXYYAIQTGKPVSSKTWLNDLIKSNK