Scaffold B570J29582_1000002

Overview

Basic Information

• Taxon OID: 3300002351
• Scaffold ID: B570J29582_1000002
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05MAY2012 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 79703
• Total Scaffold Genes: 94
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (17.02%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012010	Metagenome / Metatranscriptome	284	Y
F053077	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29582_100000215	F053077	GGA	MLYQLPNGKVIYLSVDQFLELTDQDIQYMVSQEFGDHIINPFTDSAIIKTKKDKYYDFDYLADDENVDNIISDDEPFDDIIDLSDQTEI*
B570J29582_100000250	F012010	N/A	MTEIFNRLIQEGLTPNTYYVLHCIKEKTVPNNFVSKSLEVTKLKNDKWLDKDLKLTTKSIIFIDEINSFFKKTKKKTSQLLLGQDFTDKIQEYVEIFPNRKLSSGKYARVNAKNLEVSFRWFFENFDYDWPTILSATEKYVDEYSVRNYEFMRTAQYFIRKQNIDKSFESDLATYCDQVNNSLDEDTNYFKERIV*