Scaffold B570J29583_1000772

Overview

Basic Information

• Taxon OID: 3300002350
• Scaffold ID: B570J29583_1000772
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUL2012 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2596
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016922	Metagenome	243	Y
F026794	Metagenome	196	Y
F057879	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29583_10007721	F026794	GGA	MMHIDNPGSISERDLRVTASQQFFADLDAREATRGEVTFDELDRRYADPISREELTALLPFIIAFTERETVWCYELMERHGRPMHTWTPITEWDGHFRPECLSLTYRTDNPFATE*
B570J29583_10007722	F057879	GAG	MQMSTEPSTEQTNPRDTVRPEPVPTGGQQEPSSPFSDASQVPPWEL*
B570J29583_10007726	F016922	AGGGGG	MNPIRISSRAIQCVADAEGATEYAIRYGGRDFIVTAHSRLEADIAVEYYRAPEADESQPDLLK*