Scaffold B570J29583_1000478

Overview

Basic Information

• Taxon OID: 3300002350
• Scaffold ID: B570J29583_1000478
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUL2012 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3245
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F002387	Metagenome / Metatranscriptome	565	Y
F003603	Metagenome / Metatranscriptome	477	Y
F007468	Metagenome / Metatranscriptome	350	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29583_100047811	F003603	AGGCGG	MKTKEQQVAELLCNYSEDHFFNPASLGGFLADQPTYTLDRIMEVVTWVIEKQARRYEREVENGGMVSEGLALAYKLDQVVDKIKEKNTFNNLKLPITXQERKAIIDRMPKEKTGDYKYSWLHETNNTNKQYIDQSYM*
B570J29583_10004782	F002387	GAGG	MSDPHGIIGYYRKGGGIMASFLEDVNQMVIDAVYQDIAEQLLEDWINSNLDEGQYYADKQFAEMSGDEFIYDEFNKFYNLKEGDEDYLC*
B570J29583_10004784	F007468	GGAGG	LTTQTKSSKFIEYMKIHLISLNQDLEGDYNVQSKINIQGQIMATEHLLSVATDIMNNSNERYNNDNI*
B570J29583_10004787	F000441	AGGAGG	MQQTDKYINEQLSKAQALLWSGSLHEQDEAHNIIAKLINDRMGKXEGQND*