Scaffold JGI24214J29971_1040885

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24214J29971_1040885

Scaffold JGI24214J29971_1040885

Overview

Basic Information
Taxon OID	3300002343 Open in IMG/M
Scaffold ID	JGI24214J29971_1040885 Open in IMG/M
Source Dataset Name	Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - F_92min_Anaerobic (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	922
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Source Dataset Sampling Location
Location Name	Madison, WI, USA
Coordinates	Lat. (^o)	43.078418	Long. (^o)	-89.386482	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034481	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24214J29971_10408851	F034481	N/A	REKMKLVFISFFLAFLAVVYASGSHTAVGENVVPHVQPDQVVNPADWHGSWTAKNRYGGVMYTCPKGDVLYGIYSNAGFLIGTINDRVVEGNWYEGGRGARNFYQGSFKITISDDNQEFDGFFNRVALGQGPFRWHESRLGAPEPSNPTWEECFAPDDSVENLLGSYYRSSETGALSGSYFICEDEWNQIYGSFHQPDGYLSGWSVQDATGFHGYRYDANGQSGAYILRALTRDRVKGFYWRGRVAEQNIGTTSWEALYRNGFTATLNQCEQVGPGFNERLRGPRMEDNSASTLQLAVFALIAMVL

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