NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20171J29575_12088580

Scaffold JGI20171J29575_12088580


Overview

Basic Information
Taxon OID3300002308 Open in IMG/M
Scaffold IDJGI20171J29575_12088580 Open in IMG/M
Source Dataset NameNasutitermes corniger P4 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)783
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000053Metagenome3216Y
F001336Metagenome720Y

Sequences

Protein IDFamilyRBSSequence
JGI20171J29575_120885801F001336N/AMQHSIIKFIVVVQTVLNMFRALQCPSSGARQTAVAASGFRMNVEVEV
JGI20171J29575_120885803F000053N/APRPTALLSTCSDGKPEAATAVVVAPDYGREDVRNMLSCT*

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