Scaffold JGI24890J29729_1025121

Overview

Basic Information

• Taxon OID: 3300002307
• Scaffold ID: JGI24890J29729_1025121
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-C2 co-culture F-D7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1352
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.1666
  • Long. (^o): 13.0333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F040590	Metagenome	161	Y
F041182	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24890J29729_10251211	F001059	AGG	MATYDIEALKADLPTAKELAQFVYDKTQIPLDFIGKPKEDQYQVAKNALEGKKIPSEYMTDLNPYLDKKELIPEDEIKQLPPRSPDLPPEESRVHFFGATNMPHPADPQSDRKVQINFRKYDNGVITFQITGPLEKTAIGERINKFGQKQPEKYSWLDPRTPETLMRRADGTYTEKGRGLYAYCSGE
JGI24890J29729_10251212	F040590	N/A	MSGYGKIISGGARMTKGLTKNVNDKLGGFAESHKMSATLANSVRKAFNQNPLSDQHLNDINVAASKKFTTPKLPAKI*KV*
JGI24890J29729_10251215	F041182	N/A	APFESSRAPIISIEHVQNISKEEEVSADEALDDFLMAIRKV*