Scaffold JGI24890J29729_1012939

Overview

Basic Information

• Taxon OID: 3300002307
• Scaffold ID: JGI24890J29729_1012939
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-C2 co-culture F-D7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2225
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.1666
  • Long. (^o): 13.0333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017591	Metagenome	239	Y
F065442	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24890J29729_10129391	F065442	N/A	QLQQFAPSLYKQLVTTAEQRFNAKIRTIVCPTSLRTHISDTMPTSRSINRVNSERGDTIATYEGDFNYTYEIFDSWIMDQVGAGNSIYFLNEEVLQWGSLRDLGPNNEVFSNADASLDQFILEGTLIVRNPAGVACLHDISPNGTYVGVNPSTGASGTLRPTAYVQRLNAWDGNAF*
JGI24890J29729_10129393	F017591	AGGA	MSTFIPDANGLVTFIQNWTGSTNNQEIQDCIYMAELGMRNIELPALRTNPYTTFGVADSNGYVPIPADMNRPILFFNQGPNGTASNXGGGPWIVYDRIGDRDMIADQMIENLYLKPMNIPQVYRGKFSEVGQVYEFIPGLSAGAVINMYYFTTWPQLFTTDVNGNEVLTNVVLQSWPEGYVYGALREYYLKRKMPDDAAAWDAKYNLAWDTIEDQNNKGKWSGGNTRLTSIFQPRKDRRYTAR*