Scaffold JGI24890J29729_1001201

Overview

Basic Information

• Taxon OID: 3300002307
• Scaffold ID: JGI24890J29729_1001201
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-C2 co-culture F-D7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12346
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.1666
  • Long. (^o): 13.0333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F004695	Metagenome	427	Y
F070626	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24890J29729_100120112	F004695	AGG	MLFKQNLVVENLASPSGNRGIAEKVCHEAYMKMVDYLRLTQAKNTYNRFTDYHYLNIPVSESTEPIRGLDYIHPIVTPGIDYATAVITKCLMPDGKVNFEFERFDESDQDXAEQATDMVKYFLNNKNNSYMTIRDWAQDALLHKNGIVMVMPVRENIIQYKEVTGTRDQLKVFEIEAAQKGLKPLRQEMRKVDVNLQQAMMEAMQPGDEQESEQEVDPNAELNEAIKNNTVYRAKYKLSGTKTNIRIKHVAQHYFVCNPTIPQIMYQDFVGFYEPMTIHEAKVQYPFIDMEEFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYARVVMLTTAWLRKDVDGDGEEEIVEVCYSGSYILYVKEVDFIPLANMCPKPITGNFFGYSLGERLVPIQEYATSIKRAELSFAMQASTPKMGVNPEFIDAEEIQRGVSALFILDRKFDPAKHVYEFAPLQGNLAYVESAMQSLKEDNMAMIGMTNPNDSLNPEVMKDGNSGFKLQTAMGPNQLIQDELIKNCAIAVQDLIHLVWHTMIQYADDYSIQQLAHICSEKGGSFLDAEKMANYEFIDRKMINIDLGLGFMSDENRLTRQQLITQAQQQFAQAMMMLTPDMPEMFDKARRPYEDTLRVLGVRHVDAYLPTLEEAMKILQAKSKAPPSAEDQLHQSKAQLNQATTQEVQAKTGKIVKETQQMDVDNMFDAMAAKKGTLKDVRID*
JGI24890J29729_100120116	F000857	GGAG	MELNLDNEDAKVNEDYYTKGNLEAGIEGILSRNNQMFNDVKSGTWSQTFKTDRIDYKIGAEDGQRYVQYTQHNVDAIKQNCKERREFYKIHGTANPFFAGTFHAMDLPKCFAHEISSKWFNNRPWELIKQDRDDKILFYAIVNEYYSDFVCHPSGKIPLPYNPIIPTR*
JGI24890J29729_10012013	F070626	AGGAGG	MEIEWSLAHPLDDVQDIVDMADNIFGDEVEGVLPTSRATFRKNVTVASTVQLFDRTKEFLAVARVGNISGTGEYSDKLLGFCWFDRYGYTTYSNDEISNAKFHHVDLALPVKTRVKLINAMIDQHILWAYQNGIPVVCSTSIRSEHSGFMRIHEKRGFKVSGSYAWIRTKEGLNGIKGVEISSNESR*
JGI24890J29729_10012019	F001059	GGA	MDIYDIDALKADLPTAKELSQFVYDKTGIALELIGKPKEEQYLAAKNALEGKKVPQDFITTDNPYVDKKDIIPVDEKKPFPPPRSDSLPPEESEIHHXNATNMPHPTHPQSDKKVQIMFRKYDNGVITYQIMGPTELIAVGERINKFGQTIPEKYSWDDPXTEEIMLRRQDGSMTEKGRGLYMYCTGEKGANIWPLIDKNIESVSAKNIADPWA*