Scaffold B570J29644_1002329

Overview

Basic Information

• Taxon OID: 3300002303
• Scaffold ID: B570J29644_1002329
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1452
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003603	Metagenome / Metatranscriptome	477	Y
F024786	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29644_10023291	F003603	AGGCGG	MKTKEQQVAELLCNYSEDHFFNPASLGGFLADQPTYTLDRIMEVVTWVIEKQARRYEREVENGGLVSEGLALAYKLDQVVDKIKEKNTFNNLKLPITXQERKAIIDRMPKEKTGDYKYSWLXETNNTNKQYIDQSYM*
B570J29644_10023293	F024786	GGAG	LPVYRVFGTKYHNYYTXIEAADQFEAVDLANALPETEWNSILTDDVIEATDVYLNEDTSNELQLNI*