NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24891J29808_1008375

Scaffold JGI24891J29808_1008375


Overview

Basic Information
Taxon OID3300002301 Open in IMG/M
Scaffold IDJGI24891J29808_1008375 Open in IMG/M
Source Dataset NameLentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI co-culture FSW-F8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)993
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → unclassified Pusillimonas → Pusillimonas sp. (ex Stolz et al. 2005)(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location NameBrandenburg, Germany
CoordinatesLat. (o)53.1666Long. (o)13.0333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065526Metagenome127N

Sequences

Protein IDFamilyRBSSequence
JGI24891J29808_10083751F065526N/AMDETDFVEVMPSEKKPRDARIEKMDAQFLPQLPATILILGQCGSGKSSALWSMMSKGYVTGKTKKKSIFDEALIYIGTLDAKPSFEKMPIENKLIMTEFEPVSFDEYQTDLKKHQLERLEKGKPMMNTAIIFDDFAGASLMRKAKVGSAPPIEKLCLTSRHESNCTLFYLTQFYKNTGFTSPAVRANITTII

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