NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24891J29808_1001026

Scaffold JGI24891J29808_1001026


Overview

Basic Information
Taxon OID3300002301 Open in IMG/M
Scaffold IDJGI24891J29808_1001026 Open in IMG/M
Source Dataset NameLentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI co-culture FSW-F8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7053
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location NameBrandenburg, Germany
CoordinatesLat. (o)53.1666Long. (o)13.0333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030662Metagenome184Y
F048735Metagenome147N

Sequences

Protein IDFamilyRBSSequence
JGI24891J29808_10010262F030662N/AMRLKDRNGPIPSGLWYEYSDDKGTKYRVNGMDMTYGYQFSNRVKDDMKNNNVEVPDNLDYLXEQQICGRXPGQYCWQEAGDKVANVIHTFANLGDRVAATLGVQTNLEQAARGCTACQKRRQAMNQTLG*
JGI24891J29808_10010263F048735N/AMEYNGLVLDAPKDTTYGIPYLESVPQFVRELTAYALTRGEFGRRERIKRGIRIEDTDLKNPAQHMINCFNLIYGNDVLLHSQGIPNNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIVMDWISAPTVTSTYVASTSLDASEDRLWGKVCTLYRIAMRNIQAQNKTATIGNLVEYRRMIVFESIDTRDTERDYTNAIKALAFPKGGEGKRAVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPAATANNPHTELCQPDDPMEWDSVTRYTKKWKTRTGVALHLSGEDSPNFKLPDAEIPPFDRFLTIQGEEATLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKAFIQGCNLNYEPVWSGRTKVVCGFDPAFTAGGDRCAATFCRMGQNDTGRNIGFYLGTREYSSSVGDVFEESIAMQLVKDCIEFGVHPRDFGLDISGDGGKMMRAIIIEWSKFHPEAMFVFPISSMGMPTDRKISNLDQRTCKEAYDRLVTEYWFAVHTAFSTRSLVGIDVDAHSKVVNELCSRLYTHKGRKVAVEKKLDMKHRLKKSPDLADSFTYAVQMLRKAGLEFAFEEETVSLDIQEISDWENRLIHSKTTSQEQIEDDEWGYGGKGTDDDGF*
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