Scaffold JGI24891J29808_1000735

Overview

Basic Information

• Taxon OID: 3300002301
• Scaffold ID: JGI24891J29808_1000735
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI co-culture FSW-F8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12040
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.1666
  • Long. (^o): 13.0333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033683	Metagenome	176	Y
F102402	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24891J29808_100073517	F033683	N/A	MSYEEIVNNAKTAAADVRWFNGTSESILTRLDRLQEILDGTRVAASNPNASTNELERYASIITELSVEKEQLEKLASEYVDFDAEDYLNSLPGGTIAKEYRISSAGTSDLGEDDGSLLYRTAASIENEFEDADWIGFVTAGAEVWTEDQNNNLLKSQLDTREAAVFYVEKKTLPILDSVKRASIISNFVDNVEICRRAKNDTQNFRNIKSASAKKLAANIISDSIEDSFGDNLNWL*
JGI24891J29808_100073519	F102402	N/A	MDSTSESISLAVAVLTAVISDQEDIAYEMVLDSDPIELFSGLTGITLGALNNLSEINGTTIDVYLKDLGMM