Scaffold JGI24891J29808_1000704

Overview

Basic Information

• Taxon OID: 3300002301
• Scaffold ID: JGI24891J29808_1000704
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI co-culture FSW-F8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12880
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.1666
  • Long. (^o): 13.0333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021233	Metagenome	219	Y
F029972	Metagenome	186	Y
F052345	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24891J29808_100070414	F029972	N/A	MGKFQQKFSQRQERELEEQWPLAHRTVGSGNKWEKGDLSTEEQFNISFVVEAKATQAASFSITKKIWDTIKEHAQNRSWLARPILAIRLYGPTVEKTSWGGERENTPENLPVELDLICIDKNDFLELYYDYLRLKEEENSGQ*
JGI24891J29808_100070418	F021233	N/A	MSTNKPLRRGLEGLTEPELGTSHNDKFGELHEFAVRAFTWKTKPEDLAMLDTVERVVDDFMKDYVDPAEVIVARFNTDKNITADEADRLFLNLQSAITAIDEEVTRRYLKAQYSYYMLDDKYWDAWRKPSGGTQKDLEAVAKLETREDRQFYFVQYAAWRMINDKVNSLKATQRYIQQQIYRRS*
JGI24891J29808_100070420	F052345	GAGG	MDRRTREFTELVKMTPTTQDLLSEEIDGELYLYKSSPQCKICTTSDDLKNIIDSLLLFPKSYKEVLQAIEPIQDKLGIDGSERINYENIRNHQKRHLPFEKRMVREIVEKRAAEKNRSILDAGDRLLTAEAFYEIIVAKGFEGIAQGYDKPTLTQTMYAMDMLTKLEKEAKDDYRPEELVNQLDMILIAIREVLPADMKETLFNKIEELQLGTSTKKKPKRIKAAEVIDVEYIDEDLEEGL*