Scaffold B570J29599_1000439

Overview

Basic Information

• Taxon OID: 3300002298
• Scaffold ID: B570J29599_1000439
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3662
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006844	Metagenome / Metatranscriptome	363	Y
F008305	Metagenome / Metatranscriptome	335	Y
F019826	Metagenome / Metatranscriptome	227	N

Sequences

Protein ID	Family	RBS	Sequence
B570J29599_100043911	F019826	N/A	MGFMRRSIRLGISKEEKVAGRITTLLSDFTLDLEAIGFYLAKGAPHIIYTRANEVLEAMQYNKEVEQLDRGAYYGNGR*
B570J29599_10004392	F008305	GGA	MLGYTYKDIQAFGDSLTWAIDTAKNQGDEQNYKQLLIVWDFFEGLLAEGYIDENTFYG*
B570J29599_10004399	F006844	AGGAG	MAKWEIEVXFEPTGDYMNFVYETDTEDEDXIFNEVSNQLSIVPNLVEKNEEE*