Scaffold B570J29587_1000027

Overview

Basic Information

• Taxon OID: 3300002296
• Scaffold ID: B570J29587_1000027
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 02JUN2012 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14311
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F012452	Metagenome	280	Y
F016643	Metagenome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29587_100002710	F016643	N/A	MSIFNPIWRVRIGGVEYTNFALANLSITSGRTNIYEQANAGYVNLQLINLDQSIIDIEINDAVSIELQDSTNTFVPIFGGTVVEFDINIAASGVVAINQSVSIIALGALSRLPKSLTEGVLVKDNDGDQIYSVLADLLLNTWNEVPAALQWNTYEPTTTWANAENIGLGEIDRPGEYELAKRNASTIDVYSLVSALATSGLGYIYENAQGQISYAAALHRSIYLATNGYTDVSASQAIANSLSIQTRSGDIRNDITLKYKENSTLEVTDSDPASILAYGPLAQIITTTIENQTDAEDQAAFYLGLRSYPQANFRQITFELTNPEIDDSDRDSLINIFMGLPLRINDLPLNMSAGTYLGFVEGWTWRAAYNTVSVTAILSPLAFSLQAMQWQDVSAAETWNSISGSLDWATALVVA*
B570J29587_100002717	F012452	AGG	MAGFLENYEGNKERTDRWLRTFPHGRLEAHIIEFNAEKGYVLVQAKAWRNQEETEPAGIDFAFGYREAYNPNMKRWFCEDTVTSALMRVMALVMGGTEKATKETMEQVKINDATKPQDYDYWTTKFGDVPSYKTAGEAEQAGIPSLGSSMDEIAKQLGGELVQEAPQCRHGHRVWRTGTSAKTGKDWANYSCVGKKPDQCEPLWYVFTSDGTWKPQV*
B570J29587_100002718	F000403	GGTGG	VSDYIEIIYTQEMKARLMCNGEIVEEYKIEQCDKCSQLRRLDHFGYQKGYDKQDNIIWFCGDCR*
B570J29587_100002719	F000903	AGGA	MIAAIQHCHDRSADHSSRIVKNLSWFEYVAQMGESMLAELVVAKRLGYEYTPGITWDKSKADVGEHIEVKWSANPASNLWIQESDRHDRDIAVLVTGNAPKMHIVGWMPVAVAKKPRYRNASQNNWSVPQINLQPIETLMRSNYAHPSI*