Scaffold B570J29584_1000004

Overview

Basic Information

• Taxon OID: 3300002294
• Scaffold ID: B570J29584_1000004
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 17MAY2012 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49380
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (85.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012001	Metagenome / Metatranscriptome	284	Y
F020684	Metagenome	222	Y
F054561	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29584_100000410	F012001	AGGAG	MINKEKAKQIALSYIRAAAAAAVALYTAGQRDPKVLAAAFVAGLVGPILKALDKSAPEFGLTK*
B570J29584_100000412	F020684	N/A	MNRLYSLTPEEEAIAVEVGYQRQKPYFGDPTRNINYSEGDLWELWQHVVAAGSELAFARIIGNTTFIPHFNKWKNELDIPGLGEVRYTFNDQPKLRYTNRDNDSLIYILMADGLRHKTRRTAPDWLGVPYKAIGWLYGSQCKVDMFKYNEKSWYVPATYLSSMDTLPLEQYVKTI*
B570J29584_100000434	F054561	AGGAG	MNNEIIVQNQLTLMNECFNCLQLNELCADCLEAKEARDAVIANQMVDEDIYRYKPMYSSMTKIEDEPSAHEWIGSEVVTHVNPKTGEKTIRTEFFEQSSWLIDRIFNLDDSMELTKHECICSVCHYTINKHAVCPNCA*