Scaffold B570J29590_100593

Overview

Basic Information

• Taxon OID: 3300002278
• Scaffold ID: B570J29590_100593
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3414
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000847	Metagenome / Metatranscriptome	861	N
F001129	Metagenome / Metatranscriptome	768	Y
F010464	Metagenome / Metatranscriptome	303	N
F027126	Metagenome / Metatranscriptome	195	N

Sequences

Protein ID	Family	RBS	Sequence
B570J29590_1005932	F000847	N/A	MSWIKIKQALLDLANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSATTDAGTLDLVVGVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPSEDWTLSSSVSLTRFVESRDDRTAGWQATMTFEIPYSHSVCEIPV*
B570J29590_1005933	F001129	AGGTGG	MEFINGSVTGKNYDFLVVNTAATFTTLTGTGSENLLTAYNFSGASISAGIVISGRNGGKITAVNPSAGSVIGYTFL*
B570J29590_1005936	F027126	N/A	MATFRKYEFAVYADFRTINDSEVEPRTVVELGHINPANPKAWCVDILWEGSEPKNWTKDQTWPKPVGIHTFAGWDEQYAADYEQHKSL*
B570J29590_1005938	F010464	N/A	MNLIETTIVGSVAAIVGGAVAWFTKGRVESDSLQVRQAQAVLAMWQATSESQNKELTQLRNEVVSLRQRLEEMEHTIHLLQAENAKLKNLV*