Scaffold B570J29590_100545

Overview

Basic Information

• Taxon OID: 3300002278
• Scaffold ID: B570J29590_100545
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3583
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003965	Metagenome / Metatranscriptome	459	Y
F012455	Metagenome / Metatranscriptome	280	Y
F018352	Metagenome / Metatranscriptome	235	Y
F093770	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29590_1005451	F003965	AGGA	MNSNVIIQVCKSHVPNKSAISDVNDEQFTFCEVCENNIERWYNDTDPERLPMWTXWKXS*
B570J29590_10054510	F018352	AGGA	MGKFKDTLMGILAHDECYGAGWQFVGNAIDYDVWACECNPYNVPADEIQEYHQLFNTKENA*
B570J29590_1005453	F012455	GGAG	MIKEIKNKIIRIQELRRSNAATAIPSKKNYSRKIKHKNKLX*
B570J29590_1005458	F093770	GGAG	MITLKHSVNLITEIDENKMPANLLGAFVNLNEVQMETLLRSAFIDALTLEGFLDKMNENNQWATLKIGEN*