Scaffold B570J29585_1000722

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold B570J29585_1000722

Scaffold B570J29585_1000722

Overview

Basic Information
Taxon OID	3300002275 Open in IMG/M
Scaffold ID	B570J29585_1000722 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 06JUL2012 deep hole epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3845
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002353	Metagenome / Metatranscriptome	567	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29585_10007223	F002353	N/A	LIFSFLIFCSVKREFFLFVVFPVLVADVDVREDSIFIRLRKEEVVCEDQDTSERVSSSDVLEPVVEKVPEIGSEVTVPLETIPEDLIFESGEAFSLEGVDNIPMEELFCGSHGDGSLAGSSDITGISVDTVLDLNLAS*

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