Scaffold B570J29588_100089

Overview

Basic Information

• Taxon OID: 3300002273
• Scaffold ID: B570J29588_100089
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 29JUN2012 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9176
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (88.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003393	Metagenome / Metatranscriptome	489	Y
F008305	Metagenome / Metatranscriptome	335	Y
F015730	Metagenome / Metatranscriptome	252	Y
F018352	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29588_1000891	F008305	GGAGG	MLGYTYKDIQAFGDSLTVAIDTATDPKIKQGLLTIWDFFEGLLAEGYI
B570J29588_10008910	F003393	GAGG	MIDLENDDTIQIVDYVMVDILTAGQLMIDDCILINDEVVSIVDIVSLPDGYTLEVVNDFGESEIIEVGEYDQFDLMMLQ*
B570J29588_10008913	F018352	AGGA	MGKFKDTLMGILAHDECYGAGWQFVGNAINYDVWACECNPYNIPADEIQEYHQLFNTKENA*
B570J29588_10008921	F015730	AGGAG	MLTQNTLDKIVYEYQHGGVKSNHPELTTYERKALLKHFSLSLLIALVV*