Scaffold B570J29577_100246

Overview

Basic Information

• Taxon OID: 3300002269
• Scaffold ID: B570J29577_100246
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 01JUN2011 deep hole epilimnion ns
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3776
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F049635	Metagenome / Metatranscriptome	146	N
F091602	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
B570J29577_1002462	F049635	N/A	MNKQIYSTPFGRLVKINFKTLTNFKAALRISDPTARLYVTHPERMRIKDFNNICLHTGLSREEVFSTFTPTKLINEEND*
B570J29577_1002464	F091602	N/A	MKSELTFCPNCESKELGERVDEILRDQQLEDWDTAYEFVDDEGEIKVCFDCQEWDDADDDAKGEGWD*
B570J29577_1002467	F012871	GGA	MLRNASTTTLTTTQRVDRAERESAFVADYELPAFVKLCSKVCAMYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELSKKCEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAESKEEESKQLKEKEMAVNDDSWRRMFAEDLHNFKKGKYTVIEIRAVSLMRWLEESKQINADTFTEEEYRLCKANAKKNIYFEQQLVQSMVERMSDRKRMLLKESIRFEGMRELYKLYLSKQ*