Scaffold B570J29577_100116

Overview

Basic Information

• Taxon OID: 3300002269
• Scaffold ID: B570J29577_100116
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 01JUN2011 deep hole epilimnion ns
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5301
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037057	Metagenome / Metatranscriptome	168	N
F064384	Metagenome / Metatranscriptome	128	N
F089849	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
B570J29577_1001163	F089849	GGAG	MLSIVTTTTILGIDMPECPDEPDRFVSAWGGYIPITERQKELILAIKVKRDELLPDELKQFADNERAHTDDNCPSMGRNPGSSSAQARNPSRSSPTPGPPKAKKQALTQRPISPYRPEIVPDGCREYAAVCAGTVLSTHIAYRPSSEFRDILQVPATPMHVTDYGNIIQDELFGGSDQDAPVIMRTNPVHDASLDCLDSGDGDDDCVANESALESDDEMAASENF*
B570J29577_1001165	F064384	AGGAGG	LEPIPRGXLPSQDXIKGILHELARFNFFKRELPTFPVSFPQKAPTQKPFDVYHVPTGILTPRDLEYKNERNIPIPPRDDQTSALMQLLTCGHVKPFRRDSTMIFVKRGQWVLMDMNNPGFEIENCAVHFAXIPREGVLHIARDYANTTFKSFRDGKSGIPSLPERRHANKVFNLFLFNLS
B570J29577_1001167	F037057	N/A	GNVRLDSSLAGVMKANIYSFFRRKFVQNVRSPPGIYIVTTVPDARVLVLLEDCDTGYECSFIVTLYEGLRALCFCAAQKDNLMVSLELVQDDHRFATYGYKMNAVAIVSQSAVNDFRTEADILAFSVREWDIVMSECCDLAARGESHRHSLFYNWQYLNKFNFSRELCSHDRRRWPVPPHWYKKALGFRNSDVRSQIPFPDTFDIDKLFYDGDEV*