NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGIcombinedJ26739_100052475

Scaffold JGIcombinedJ26739_100052475


Overview

Basic Information
Taxon OID3300002245 Open in IMG/M
Scaffold IDJGIcombinedJ26739_100052475 Open in IMG/M
Source Dataset NameJack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3715
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000232Metagenome / Metatranscriptome1513Y
F007323Metagenome / Metatranscriptome353Y
F079644Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
JGIcombinedJ26739_1000524752F007323AGGMPRKRVWIEKRNFQGFGCSECDWVFKPSSALVRESRNEMKQTFEAQRDKEFAAHLCAEHPRATSPKTE*
JGIcombinedJ26739_1000524754F079644GGAGGMYPGYQPKPDDVFHVVGYTSRDISDNTHFHLHGISDRVRMENENLWRQLGPLVRAMQSGQIKREFVEVLSVDPFLGNYEMPYTGPNKEMFLSIEYLSDAAFRLCREYGIRHPAVIEKVERAVIPGNHGITLRTVRYSRI*
JGIcombinedJ26739_1000524755F000232N/AMKHPKHHERXRQKPPATLAAPAYHRILVKHGLIAKTLPIPDAYKMFLKVSADPEVQKLRRKATTGNKMKNVPALYVVTAMALEGMTKEELEGLKLRIVTQSPKTRQF*
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