Scaffold JGIcombinedJ26739_100045542

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGIcombinedJ26739_100045542

Scaffold JGIcombinedJ26739_100045542

Overview

Basic Information
Taxon OID	3300002245 Open in IMG/M
Scaffold ID	JGIcombinedJ26739_100045542 Open in IMG/M
Source Dataset Name	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3970
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Algoma, Ontario, Canada
Coordinates	Lat. (^o)	46.42	Long. (^o)	-83.37	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016184	Metagenome / Metatranscriptome	249	N

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ26739_1000455422	F016184	GGAG	MAKVWKITAYEEQMGGGPPRKHYYLVAMSDQSAALSALRKRPGLRDVDLTVVGEASSNEVEWLDLKDGEIFVVMPIFETRFSK*

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