Scaffold JGIcombinedJ26739_100031780

Overview

Basic Information

• Taxon OID: 3300002245
• Scaffold ID: JGIcombinedJ26739_100031780
• Source Dataset Name: Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4683
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001686	Metagenome / Metatranscriptome	652	Y
F002873	Metagenome / Metatranscriptome	524	Y
F022384	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ26739_1000317802	F001686	AGG	MSEFTVWMQSNWYALGNLLFQFAFLAAGVWFAREILRTIRASQEQVGALLKLSITGANTERHSPIAVAERTLAGASPYWLTPTEIPPIGPLGPPENGPGRLAVARHGLVVWLQTPMSSGDAAPWRRAIKWLQAPAGS*
JGIcombinedJ26739_1000317804	F002873	GGCGG	MPAARDLQERIICWNVISGCYRLRTVFKRLMILGIAGLTFVLGANYLLVYTLKQQVTRERERQDRTYWSAFNAVEQFGEHADQVSEQKAKAALDEARQKGLSKIRARILQNYLEDLEHCYQGDRESCKKANTDMNEAIRVPAERK*
JGIcombinedJ26739_1000317806	F022384	N/A	MFAALVLDYRLAFLFLAALSLGSAVPLAFGWARVLPEEPLPFGNAEDSFRQAKNSPAAPVLMSKKRDPFAIVLLLCVTVSYACQLPGVPRGMGFGSIPTVIPHNTRGWIEFAAIWFLVLIPGFASVYSLLRPNXLRVPLIAAGMMILLLWLLAAPLRAALEAVS*