Scaffold JGIcombinedJ26739_100030503

Overview

Basic Information

• Taxon OID: 3300002245
• Scaffold ID: JGIcombinedJ26739_100030503
• Source Dataset Name: Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4768
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004186	Metagenome	449	Y
F025117	Metagenome / Metatranscriptome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ26739_1000305032	F004003	GGA	VVASVIRIAASMAAVGILAACGGPGAPLGPPTAKDILSKPLHAGLKDAHFVVSGKFVSPTPGGAPVDVHGDGALVYKSPVAGRLKVETTVTGTQVSYQDISISGVDYTFIAPGNGKWTAKKTSTGLGPDSFIGATDFTYVGEESLPNGKAWHARAKDPEGNLLDGWIRESDGYPLKYEFTQQGNALTLSFDKYNTGESITAPPASQVVQG*
JGIcombinedJ26739_1000305033	F004186	N/A	MVAALTAACGVPTPLAPPSAKEVLARPQQSSLKDAHFNVTGKIADNNATVDIVGEGALVYKPKLAGRFQFTTNVSGQTMTIKEISVGGVNYGLTQASPKWVASPSPTGIDPNAFAGKSDQKYVGEENLAQGKAWHVTAKDDGGNAFDAYIRESDGYPIKYVETQGGGQNITLTFDKYNTGETITPPPADQIQAG*
JGIcombinedJ26739_1000305036	F025117	GAGG	MMNDYYSLYTWAMDRQAELQREAAQRKLVRHSPYLNTHDNSRLRWPLARRRVDENRKAA*