NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGIcombinedJ26739_100017470

Scaffold JGIcombinedJ26739_100017470


Overview

Basic Information
Taxon OID3300002245 Open in IMG/M
Scaffold IDJGIcombinedJ26739_100017470 Open in IMG/M
Source Dataset NameJack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6071
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021735Metagenome217Y
F062651Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
JGIcombinedJ26739_1000174706F021735N/AMLALLRDRRRSAPGERSTPSVSLPLRIHPARASALGWLPEPFALTLLVANGTFRQEDGALLAGQGGPVVAICAEYERPLTSLGPPALATYSLARARLQGMPTLRLAGGWFRAPLRLETTHRAARAASHRDEAVARAARFLEELKAAWQRRLGAVLEVAWPVYAPEHPGPLLDAVAGTALPELQLR*
JGIcombinedJ26739_1000174707F062651AGGAGGMQKNILILSLAALLACAHEEVAQTPAERDWEKGLDAARGPQIAPVGPIDTDQGAYNYIRRREQEHDLGSRMTAAGLDEIITASSQVLASAMALPLFRAGVYLGQPRLIERGCTSARRVTHSALRASGNVDAVLQGCGALNASKQGPSDACGDGRQKLRDAYALLAADKGPDAGRTAADAVRLLRDRCPKITAPLRTPVDPGSRGFLVVWVLHANDAPPVTFLAGETAPNTADAINDAFLRGVQAVRPVAQNP*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.