Scaffold JGIcombinedJ26739

Basic Information
Taxon OID	3300002245 Open in IMG/M
Scaffold ID	JGIcombinedJ26739_100015621 Open in IMG/M
Source Dataset Name	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002245 Open in IMG/M

Scaffold ID

JGIcombinedJ26739_100015621 Open in IMG/M

Source Dataset Name

Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6377
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

6377

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (90.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Algoma, Ontario, Canada
Coordinates	Lat. (^o)	46.42	Long. (^o)	-83.37	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Algoma, Ontario, Canada

Coordinates

Lat. (^o)

46.42

Long. (^o)

-83.37

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022248	Metagenome / Metatranscriptome	215	Y
F026812	Metagenome / Metatranscriptome	196	Y
F050161	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ26739_1000156214	F022248	GGAG	METMLGFAGVVVITMLALFAALALQTALLHLTIRLMQPATADRRPMRLAVAHGTXLVARAFQVQR*
JGIcombinedJ26739_1000156218	F026812	GAGG	MAAAVVVWAMAMGAGIAQAQAPSCTDLRAQKEKVYGFHLTQLNETQIDAKSKEIDAYWKQLQAAGPEGVSCLKEMLAAEKTDHIFQFDAASFLFQLDKSPESLNVVKDAIVQTDFQETDPANYLSLALELGQRGVNIQPLAARLLLFPNAIIHISEHSLDLDSDTAALFLYGSMDSTKASKALIAQLQAPEPFVRAAAAHLLAEEMTEEAFRTLSAWVGLADIKEDYRRNDIQAVMKYQAPDPAEFANPRWTREQVLQIIAVLPHTRKEFDDVMSTRGADFDKQVREKKPTQEELAKAVAESEPIYGISDRIAFQNSAVATLKAEDFDTLREARRKALYNISDEGLSEYLAYTQVMIRLLNRLDLYRDYRAH*
JGIcombinedJ26739_1000156219	F050161	GGAG	VQSFGKTCGKIFAAHIVFPRVLYPIAVLAAGCCFAMPVAAGNDVALRETAQRLAERVAGIPGMHGALRLEWHPDAKWSEGESNRWQEILRDEFEKRSLSLTEDAGAPALDVFAAETPAQVVLTAKTRVSERDEIRIVAAARALLPPGSLPAAPIRLERQMIYESPDRILDVSSPGNGTEAGLALLVYRNFEILALRVDSRGAVKQGVSLNPANLKPSRDPRAEMSARGSALSVELLGKSCEFSWELPAEVKCHAEKPSAGVKSAWRAETLLTSPCDGSNWKLFSSGGEANARGVLQVVPDGALRESSAAVLSEFPGPILGTNGEQNPSSALVITQNLRTGNYEIYKITLVCGN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGIcombinedJ26739_100015621

Overview

Ecosystem & Geography

Associated Families

Sequences