Basic Information | |
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Taxon OID | 3300002242 Open in IMG/M |
Scaffold ID | KVWGV2_10754413 Open in IMG/M |
Source Dataset Name | Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey mat |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1255 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc |
Source Dataset Sampling Location | ||||||||
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Location Name | Kolumbo Volcano, Greece | |||||||
Coordinates | Lat. (o) | 36.5 | Long. (o) | 25.45 | Alt. (m) | Depth (m) | 494 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004990 | Metagenome | 416 | Y |
F011253 | Metagenome | 293 | Y |
F060420 | Metagenome | 133 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
KVWGV2_107544132 | F004990 | GGA | MYGDPKKKCCICEKKADLKEGTRYFCCNHYATNILGKTMEQIEKELKGKGYELDI* |
KVWGV2_107544134 | F011253 | N/A | LENKVLAGGVPELKDRSVDIQNIIKRLVKSKSFPYSKAVDKIKKDRKGYYQQKDIKNKQKTLSSDRFQQYLKDIQDNDNTG* |
KVWGV2_107544135 | F060420 | AGGA | MTIPAKLTVDQLDDYFQTATYVERYLPSPHIKNQKTDMFNLIERLYGIGKDKDCYKGG |
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